These Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe are the ultimate nostalgic treat you didn’t know you needed. Imagine soft, cake-like chocolate cookies hugging a pillowy, sweet marshmallow fluff center that melts joyfully with each bite. This classic American dessert is not only irresistibly delicious but also surprisingly simple to make. Whether you’re baking for family, friends, or a special occasion, these whoopie pies bring a smile and a bit of magic to any gathering. Prepare yourself to fall in love month after month with this delightful, homemade creation.

Ingredients You’ll Need

The image shows several clear and white bowls on a white marbled surface, each containing different baking ingredients arranged neatly. From the front left, there is a white bowl filled with flour, next to it two brown eggs lie on the surface; a small white bowl with white powder, and a small clear bowl with dark brown powder, likely cocoa. Behind these are bowls and containers with white sugar, a stick of yellow butter, a small glass of yellow cooking oil, a tiny glass of white liquid, and a glass bowl filled with white flour. A black and white checkered cloth is in the upper right corner of the image. Photo taken with an iphone --ar 4:5 --v 7

To create these scrumptious Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe, you’ll want to gather a handful of straightforward ingredients that are pantry staples but pack a powerful punch in flavor and texture. Each component plays a vital role in bringing this dessert to life, from the rich cocoa powder to the luscious marshmallow filling.

  • All-purpose flour: The foundation for the tender, cake-like texture in the chocolate cookies.
  • Unsweetened cocoa powder: Provides deep chocolate flavor and a beautiful dark color.
  • Baking soda and baking powder: These leavening agents ensure a perfect rise and soft crumb.
  • Salt: Balances and enhances the sweetness, making each bite more flavorful.
  • Granulated sugar: Adds necessary sweetness and helps create a crumblier texture.
  • Vegetable oil: Keeps the cookies moist and tender without overpowering their flavor.
  • Large eggs (room temperature): Bind the dough together and contribute to richness.
  • Milk: Adds moisture for a softer cookie base.
  • Vanilla extract: Brings warmth and depth to both the cookies and filling.
  • Unsalted butter (softened): The creamy base for the marshmallow fluff filling, creating luscious texture.
  • Powdered sugar: Sweetens and lightens the marshmallow filling perfectly.
  • Marshmallow fluff or marshmallow creme: The star component of the filling that gives it its iconic pillowy, sweet character.
TIP

You’ll find the full ingredient list, instructions, and print option in the recipe card below.

How to Make Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe

Step 1: Prep Oven and Baking Sheets

Get started by positioning your oven rack in the middle and preheating the oven to 350 degrees Fahrenheit. Line your baking sheets with silicone mats or parchment paper to prevent sticking and to ensure even baking. This little prep step makes a huge difference in your final cookies’ texture and keeps cleanup a breeze.

Step 2: Mix the Dry Ingredients

In a medium bowl, whisk together the all-purpose flour, unsweetened cocoa powder, baking soda, baking powder, and salt. This dry mix provides the framework for your chocolatey goodness and guarantees every bite is perfectly balanced.

Step 3: Cream the Wet Ingredients

In a large mixing bowl, beat together the granulated sugar and vegetable oil until crumbly. This combination acts as the base for the moist texture you’re aiming for. Then add the eggs one at a time, followed by the milk and vanilla extract, beating after each addition until smooth and silky.

Step 4: Combine Dry and Wet

Gradually add your dry ingredients to the wet mixture, beating gently after each addition. You’re aiming for a smooth, well-incorporated dough that holds together but isn’t too stiff—this is what makes the whoopie pies soft and tender rather than dense.

Step 5: Scoop and Shape the Cookies

Using a 2-tablespoon cookie scoop, portion the dough into balls and place them roughly three inches apart on your prepared baking sheets. Gently press each ball down with your palm to create a flatter surface for perfect sandwich construction later on.

Step 6: Bake the Cookies

Bake the cookies for 7 to 10 minutes, rotating the pans halfway through baking to ensure even heat distribution. Look for cookies that are firm around the edges but still soft in the center—just what you want for the ideal whoopie pie shell.

Step 7: Cool Completely

After removing the trays from the oven, let the cookies cool on the pan for about 5 minutes before transferring them to a wire rack to cool completely. Patience here pays off; warm cookies won’t hold the filling well and may lose their signature tender crumb.

Step 8: Prepare the Marshmallow Fluff Filling

While your cookies cool, whip together softened butter and powdered sugar in a medium bowl until light and fluffy. Add vanilla extract and salt, then fold in the marshmallow fluff until smoothly combined. Chill the filling in the fridge for 20 to 30 minutes—this step helps it firm up so it pipes neatly onto your cookies.

Step 9: Assemble the Whoopie Pies

Fit a piping bag with a large round tip and fill it with your marshmallow fluff mixture. Pipe generous dollops onto the flat side of half of the chocolate cookies. Top each with a second cookie, gently pressing to create the perfect sandwich. That’s it—your Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe is ready to enjoy!

How to Serve Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe

The image shows two parts: the top part has a white baking tray with nine small dark brown cookie dough balls placed in three rows on a beige silicone baking mat, each dough ball with a smooth, shiny texture. The bottom part shows three dark brown baked cookie bases on a white marbled surface next to a white bowl full of thick white cream and a white piping bag with a metal tip, a swirl of cream is being piped onto one of the cookies in a round spiral shape that stands slightly tall with a smooth texture. photo taken with an iphone --ar 4:5 --v 7

Garnishes

While these whoopie pies shine all on their own, adding a simple garnish can elevate their presentation. A dusting of powdered sugar or a few sprinkles of mini chocolate chips on top adds an inviting touch. For a festive flair, dip the edges of the pies lightly in melted chocolate or crushed nuts before the filling sets. These little extra steps make a big visual impact, especially if you’re serving guests or gifting your treats.

Side Dishes

Pair your whoopie pies with a scoop of smooth vanilla ice cream or a dollop of whipped cream for a classic dessert duo. If you’re enjoying them as an afternoon snack, a hot cup of coffee or a glass of cold milk complements the rich chocolate and sweet marshmallow perfectly. These pairings balance the sweetness and keep every bite interesting.

Creative Ways to Present

Turn your Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe into the star of any gathering by turning them into mini ice cream sandwiches. Freeze whoopie pies and then sandwich them around your favorite ice cream flavor for a refreshing summer treat. You can also stack a few whoopie pies on a cake stand for a charming dessert centerpiece that’s sure to spark conversations and cravings.

Make Ahead and Storage

Storing Leftovers

The great news is that these whoopie pies stay wonderfully fresh when stored properly. Keep them in an airtight container at room temperature for up to three days. If your kitchen is especially warm, refrigerate them to keep the marshmallow filling from getting too soft, though allow them to come back to room temperature before serving to enjoy their soft texture fully.

Freezing

You can freeze homemade whoopie pies for longer storage without losing their amazing texture or flavor. Wrap each pie individually in plastic wrap, then place them in a freezer-safe bag or container for up to two months. When you’re ready to indulge, thaw them in the refrigerator overnight and bring to room temperature for best results.

Reheating

To refresh your stored whoopie pies, especially if refrigerated or frozen, let them sit at room temperature until softened. If you prefer a warm treat, pop them in the microwave for about 10 seconds—just enough to warm the filling without melting it completely. This simple step will bring back their fresh-baked magic.

FAQs

Can I use a different type of filling besides marshmallow fluff?

Absolutely! While marshmallow fluff is classic and adds that iconic soft sweetness, you can substitute with cream cheese frosting, peanut butter filling, or even chocolate ganache for a twist on the traditional whoopie pie.

Are these whoopie pies gluten-free?

This Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe uses all-purpose flour, so it’s not gluten-free as is. However, you can try a 1-to-1 gluten-free baking blend to make a gluten-free version, watching baking times closely to avoid over-baking.

How do I prevent the cookies from spreading too much?

Use a cookie scoop to portion out consistent dough balls and chill your dough slightly if it feels too warm before baking. Also, gently flattening the dough balls by hand rather than pressing too hard will help maintain the right size and thickness.

Can I make these whoopie pies ahead of time?

Yes! You can bake the cookies and prepare the marshmallow filling a day in advance. Keep the components separately covered and assemble just before serving to ensure the freshest texture.

What’s the best way to pipe the marshmallow filling?

A piping bag fitted with a large round tip is ideal for creating generous, even dollops that look beautiful and hold well between the cookies. If you don’t have a piping bag, a zip-top plastic bag with a small corner snipped off works surprisingly well too.

Final Thoughts

Making Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe is one of those joyful kitchen projects that brings comfort, fun, and serious flavor to your table. They’re easy enough to whip up on a casual afternoon but special enough to impress guests or gift wrapped to loved ones. Trust me, once you try these soft, chocolatey sandwiches with their irresistible marshmallow cream, you’ll find yourself reaching for the recipe again and again. Go ahead and bake a batch—the smiles they inspire are worth every bite!

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Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe

Homemade Chocolate Whoopie Pies with Marshmallow Fluff Filling Recipe

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4 from 13 reviews

Classic Chocolate Whoopie Pies are soft, cake-like chocolate cookies sandwiched together with a creamy marshmallow fluff filling. These delightful treats are perfect for dessert or sharing with friends and family.

  • Author: Paula
  • Prep Time: 20 minutes
  • Cook Time: 10 minutes
  • Total Time: 1 hour 30 minutes
  • Yield: 14 whoopie pies
  • Category: Dessert
  • Method: Baking
  • Cuisine: American

Ingredients

Chocolate Cookies

  • 1 ¾ cups all-purpose flour
  • ¾ cup unsweetened cocoa powder
  • 2 teaspoons baking soda
  • ½ teaspoon baking powder
  • ½ teaspoon salt
  • 1 cup granulated sugar
  • ½ cup vegetable oil
  • 2 large eggs, room temperature
  • 4 tablespoons milk
  • 1 teaspoon vanilla extract

Marshmallow Filling

  • 1 cup unsalted butter, softened
  • 1 cup powdered sugar
  • 10 oz container marshmallow fluff or marshmallow creme
  • 2 teaspoons vanilla extract
  • ¼ teaspoon salt

Instructions

  1. Prep Oven and Baking Sheets: Move the oven rack to the middle position and preheat the oven to 350°F. Prepare baking sheets with silicone mats or parchment paper and set aside.
  2. Make Chocolate Cookies: In a medium bowl, whisk together the flour, cocoa, baking soda, baking powder, and salt. In a large mixing bowl, beat together sugar and oil until crumbly. Add eggs, milk, and vanilla and beat until smooth. Gradually add the dry ingredients, beating after each addition until well combined. Scoop the dough with a 2-tablespoon cookie scoop, roll into balls, and place them 3 inches apart on the prepared baking sheets. Gently press down each dough ball with your palm to flatten slightly.
  3. Bake: Bake for 7-10 minutes, rotating halfway through, or until cookies are firm around the edges but soft to the touch. Remove the pan from the oven and let cookies cool for 5 minutes on the pan. Transfer them to a wire rack to cool completely.
  4. Make Marshmallow Filling: While cookies cool, cream together butter and powdered sugar in a medium bowl until light and fluffy. Add vanilla and salt, beating until fluffy. Fold in marshmallow fluff until fully combined. Chill the filling in the refrigerator for 20-30 minutes so it firms up.
  5. To Finish: Transfer the filling to a piping bag fitted with a large round tip and pipe the filling onto the flat side of one cookie. Top with a second cookie to form a sandwich. Repeat with remaining cookies and filling.

Notes

  • Ensure eggs are at room temperature for smoother batter.
  • Do not overbake cookies; they should remain soft in the center.
  • Chilling the filling makes it easier to pipe and helps it hold its shape.
  • Store whoopie pies in an airtight container at room temperature for up to 3 days or refrigerate.
  • Use silicone mats or parchment paper to prevent sticking.

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